Comparative Genomics Toolkit 3
A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alig...
Genome wide orthology inference and dNdS estimation
BISulfite-seq CUI Toolkit
Universal Transcript Archive: comprehensive genome-transcript alignments...
Sequence alignment tools
Arioc: GPU-accelerated DNA short-read alignment
Rust bindings to minimap2 library
Collection of commonly used RDP Tools for easy building
A reimplementation of the WaveFront Alignment algorithm at low memory
SneakySnake:snake: is the first and the only pre-alignment filtering alg...
Efficient implementations of Needleman-Wunsch and other sequence alignme...
The Modular Aligner and The Modular SV Caller
For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml
Fast & accurate alignment of barcoded short-reads