Standardized data set for machine learning of protein structure
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
EquiBind: geometric deep learning for fast predictions of the 3D structu...
A Python API for the RCSB Protein Data Bank (PDB)
EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
P2Rank: Protein-ligand binding site prediction tool based on machine lea...
MoleculeKit: Your favorite molecule manipulation kit
A PyTorch framework for prediction of tertiary protein structure
Application to assign secondary structure to proteins
sensitive and precise assembly of short sequencing reads
Bio4j abstract model and general entry point to the project
Official code repository for EquiFold: Protein Structure Prediction with...
Implementation and replication of ProGen, Language Modeling for Protein ...
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
Geom3D: Geometric Modeling on 3D Structures, NeurIPS 2023