Official git repository for Biopython (originally converted from CVS)
Python package for building, comparing, annotating, manipulating and vis...
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to ...
RAxML Next Generation: faster, easier-to-use and more flexible
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alig...
Bayesian Evolutionary Analysis by Sampling Trees
MrBayes is a program for Bayesian inference and model choice across a wi...
Maximum likelihood inference of time stamped phylogenies and ancestral r...
Phylogenetic analysis in R
HyPhy: Hypothesis testing using Phylogenies
Efficient phylogenomic software by maximum likelihood
Bayesian Evolutionary Analysis Sampling Trees
PhyML -- Phylogenetic estimation using (Maximum) Likelihood
Haplotype-aware CNV analysis from single-cell RNA-seq
Population-scale genomics