Structural variation caller using third generation sequencing
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
Fast and accurate de novo assembler for long reads
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore ...
[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopo...
Long read / genome alignment software
Clair3 - Symphonizing pileup and full-alignment for high-performance lon...
Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio...
A high performance and compression ratio compressor for genomic data, po...
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Technology agnostic long read analysis pipeline for transcriptomes
Transcript discovery and quantification with long RNA reads (Nanopores a...
CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
PacBio® variant and consensus caller
Comprehensive TE insertion identification with WGS/WES data from multipl...