RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with...
Repository to host tool-specific module files for the Nextflow DSL2 comm...
Python package with helper tools for the nf-core community.
Assembly and binning of metagenomes
ChIP-seq peak-calling, QC and differential analysis pipeline.
A single-cell RNAseq pipeline for 10X genomics data
ATAC-seq peak-calling and QC analysis pipeline
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Nanopore demultiplexing, QC and alignment pipeline
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bw...
RNA-seq analysis pipeline for detection of gene-fusions
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Pipeline to fetch metadata and raw FastQ files from public databases
Assembly and intrahost/low-frequency variant calling for viral samples
Test data to be used for automated testing with the nf-core pipelines