A DSL for data-driven computational pipelines
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with...
A curated list of nextflow based pipelines
A curated collection of Nextflow implementation patterns
Repository to host tool-specific module files for the Nextflow DSL2 comm...
FlowCraft: a component-based pipeline composer for omics analysis using ...
GCP for Bioinformatics Researchers
Python package with helper tools for the nf-core community.
Lint, format and auto-fix your Groovy / Jenkinsfile / Gradle files using...
Assembly and binning of metagenomes
ChIP-seq peak-calling, QC and differential analysis pipeline.
A single-cell RNAseq pipeline for 10X genomics data
ATAC-seq peak-calling and QC analysis pipeline
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Nanopore demultiplexing, QC and alignment pipeline