Nanopore demultiplexing, QC and alignment pipeline
Methylation/modified base calling separated from basecalling.
Identification of differential RNA modifications from nanopore direct RN...
SquiggleKit: A toolkit for manipulating nanopore signal data
Transcript discovery and quantification with long RNA reads (Nanopores a...
Pod5: a high performance file format for nanopore reads.
Assembly and intrahost/low-frequency variant calling for viral samples
Pipeline for calling structural variations in whole genomes sequencing O...
Detection of RNA modifications from Oxford Nanopore direct RNA sequencin...
Pipeline for differential gene expression (DGE) and differential transcr...
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
Research release basecalling models and configurations
Comprehensive TE insertion identification with WGS/WES data from multipl...
Snakemake pipelines for nanopore sequencing data archiving and processing
Recentrifuge: robust comparative analysis and contamination removal for ...