Rapid large-scale prokaryote pan genome analysis
SORMAS (Surveillance, Outbreak Response Management and Analysis System) ...
Mathematical Modeling of Infectious Disease Dynamics
Unified COVID-19 Dataset
Rapid phylogenetic analysis of large samples of recombinant bacterial wh...
Get assembly statistics from FASTA and FASTQ files
Infectious Disease Sequencing Platform
Simulation, visualization, and inference of individual level infectious ...
Python3 scripts to manipulate FASTA and FASTQ files
Improve the quality of a denovo assembly by scaffolding and gap filling
de novo virus assembler of Illumina paired reads
Simulating epidemics using Python
Domain-Specific Modeling for Epidemiology
Predict plasmids from uncorrected long read data