An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filter...
SPAdes Genome Assembler
Clair3 - Symphonizing pileup and full-alignment for high-performance lon...
A collection of scripts and notes related to genomics and bioinformatics
Viral genomics analysis pipelines
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Assembly and intrahost/low-frequency variant calling for viral samples
Comprehensive TE insertion identification with WGS/WES data from multipl...
An accurate and ultra-fast hybrid genome assembler
Analysis pipelines for genomic sequencing data
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBi...
ClairS - a deep-learning method for long-read somatic small variant calling
Parse Illumina sample sheets with Python
R package for the recount2 project. Documentation website: http://leekgr...
Explore and download data from the recount3 project