A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
GENome Organisation Visual Analytics
Lightweight converter between hic and cool contact matrices.
Computer vision based program for pattern recognition in chromosome (Hi-...
A fast and efficient tool for converting chromatin interaction data betw...
Genome scaffolding based on HiC data in heterozygous and high ploidy gen...
Docker for 4DN Hi-C processing pipeline
Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps usin...
dcHiC: Differential compartment analysis for Hi-C datasets
A 3D genome data processing tutorial for ISMB/ECCB 2017
An easy-to-use Hi-C data processing software supporting distributed comp...
Chromosome polymer simulations and in silico capture experiments
A Python implementation for BH-FDR and HiCCUPS
A Library to Explore Chromatin Interaction Patterns for Topologically A...
Large genome reassembly based on Hi-C data, continuation of GRAAL