Detailed bioinformatics scripts and methods used in the NAM genome paper.
Long-reads Gap-free Chromosome-scale Assembler
A modern genomics framework for julia
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat...
Genome scaffolding based on HiC data in heterozygous and high ploidy gen...
⛓ Correct misassemblies using linked AND long reads
Simple bacterial assembly and annotation pipeline
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBi...
find large indels (in the blind spot between GATK/freebayes and SV callers)
Large genome reassembly based on Hi-C data, continuation of GRAAL
Suite of tools for use in genome assembly and consensus. Work in progress.