MACS -- Model-based Analysis of ChIP-Seq
ATAC-seq and DNase-seq processing pipeline
chromatin Variability Across Regions (of the genome!)
Regulatory Genomics Toolbox: Python library and set of tools for the int...
PECA is a software for inferring context specific gene regulatory networ...
deepStats: a stastitical toolbox for deeptools and genomic signals
Big data Regression for predicting DNase I hypersensitivity