ChIP-seq analysis notes from Ming Tang
MACS -- Model-based Analysis of ChIP-Seq
Tools to process and analyze deep sequencing data.
Customizable workflows based on snakemake and python for the analysis of...
A collection of Galaxy-related training material
ChIP-seq peak-calling, QC and differential analysis pipeline.
Automated and customizable preprocessing of Next-Generation Sequencing d...
A graphical user interface for distributed data processing of high throu...
Publication quality NGS track plotting
a snakemake pipeline to process ChIP-seq files from GEO or in-house
Regulatory Genomics Toolbox: Python library and set of tools for the int...
Multi-omics analysis protocols by Lyu.
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysi...
A python package and a set of shell commands to handle GTF files
Go / Golang Bioinformatics Library