Unix, R and python tools for genomics and data science
cBioPortal for Cancer Genomics
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
DELLY2: Structural variant discovery by integrated paired-end and split-...
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
A community-maintained repository of cancer clinical knowledge bases and...
Chromosome visualization for the web
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "lik...
Personal Cancer Genome Reporter (PCGR)
An ensemble approach to accurately detect somatic mutations using Somati...
Lollipop-style mutation diagrams for annotating genetic variations.
A visualization grammar and GPU-accelerated toolkit for genomic data
Training and evaluating a variational autoencoder for pan-cancer gene ex...
Microassembly based somatic variant caller for NGS data
Haplotype-aware CNV analysis from single-cell RNA-seq