:scissors: :zap: Rapid haploid variant calling and core genome alignment
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to ...
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Build a partitioned pangenome graph from microbial genomes
Pan-genome wide association studies
:floppy_disk: :page_with_curl: "Reads to report" for public health and c...
BSR-Based Allele Calling Algorithm
Identification & characterization of bacterial plasmid-borne contigs fro...
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
SEER, reimplemented in python 🐍🔮
Hardware and software for accessible, extensible, and scalable bioreacto...
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
A scalable bacterial genome assembly, annotation and analysis pipeline
Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene...
A mapping-based pipeline for creating a phylogeny from bacterial whole g...