UCSCXenaTools Versions Save

:package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/

v1.2.5.1

4 years ago

added Zenodo DOI
updated code meta information

v1.2.5

4 years ago

Changes

moved the project to ropensci https://github.com/ropensci/UCSCXenaTools
updated author list
updated README, vignette and code according to review comments from Christine Stawitz, detail at https://github.com/ropensci/software-review/issues/315
moved some packages to suggests
splitted workflow.R into multiple files

v1.2.2

4 years ago

New features

added 3 fetch_*() functions

Bug fixes

fixed #5: API function for querying single gene or sample does not work

Minor changes

updated website and documentation
moved vignettes to https://shixiangwang.github.io/home/en/tools/#ucscxenatools

v1.2.1

5 years ago

Bug fixes

fix API functions cannot be called from outside

New features

Add option to XenaDownload function for downloading gene id mapping data
Add XenaQueryProbeMap() for querying probemap of datasets.

Minor changes

export XenaHub Class
improve XenaQuery function
update website and documentation