QuPath - Bioimage analysis & digital pathology
This is a minor update, that aims to be compatible with v0.3.0 while fixing bugs and improving performance.
This includes an important fix for https://github.com/qupath/qupath/issues/836 which could cause problems when running commands on images with different channel names within the same QuPath session. It also includes significant improvements to the memory use and performance when reading large images with ImageJ or Bio-Formats under some circumstances, along with many smaller fixes.
See the Changelog for more details.
Please remember to cite the QuPath paper in any publications that use the software!
Please use the Scientific Community Image Forum for QuPath questions & discussions!
QuPath-0.3.1-Windows.msi
- if you want a standard Windows (local) installerQuPath-0.3.1-Windows.zip
- unzip it and double-click QuPath-0.3.1.exe (no further installation needed)QuPath-0.3.1-Mac.pkg
- right-click and choose Open to install. Note that this will try to install to /Applications/QuPath.app - if you have an older version at that location that you want to keep, you should rename it before installation.QuPath-0.3.1-Linux.tar.xz
- use chmod u+x /path/to/QuPath/bin/QuPath
to make the launcher executable. If you suffer pixman problems, you might find the alternative bash script /path/to/QuPath/bin/QuPath.sh
better for launching the software.This is a major update, that introduces several new features along with many bug fixes and performance improvements.
Important! It is not recommended to switch between using QuPath v0.2.x and v0.3.x in the same project. Please back up any older projects if you want to try them with v0.3.0.
OpenCVTools
The major revision of the code structure and creation of extensions is designed to make QuPath more developer-friendly, maintainable and adaptable in the future.
Check out the CHANGELOG for a longer list.
The latest documentation is at https://qupath.readthedocs.io/
The new javadoc (API documentation) is at https://qupath.github.io/javadoc/docs/
Please report any problems at http://forum.image.sc/tag/qupath - thanks!
Please let us know what you think (and want) by completing the QuPath User Survey - it closes on 16 September!
QuPath-0.3.0-Windows.msi
- if you want a standard Windows (local) installerQuPath-0.3.0-Windows.zip
- unzip it and double-click QuPath-0.3.0.exe (no further installation needed)QuPath-0.3.0-Mac.pkg
- right-click and choose Open to install. Note that this will install to /Applications/QuPath.app - if you have an older version at that location that you want to keep, you should rename it before installation.QuPath-0.3.0-Linux.tar.xz
- use chmod u+x /path/to/QuPath/bin/QuPath
to make executable - and the same for QuPath.sh
if you suffer pixman problems - then launching from a command line with QuPath.sh
may help.This is Release Candidate 2 for QuPath v0.3.0.
That means QuPath v0.3.0 will be available soon, and this represents the almost-final version. It's here for any enthusiastic users who want to help test the latest version before release, but it is not intended for production use!
OpenCVTools
The major revision of the code structure and creation of extensions is designed to make QuPath more developer-friendly, maintainable and adaptable in the future.
Check out the CHANGELOG for a longer list.
The latest documentation (including the updates here) is at https://qupath.readthedocs.io/en/latest/
Please report any problems at http://forum.image.sc/tag/qupath - thanks!
QuPath-0.3.0-rc2.msi
- if you want a standard Windows (local) installerQuPath-0.3.0-rc2.zip
- unzip it and double-click QuPath-0.3.0-rc2.exe (no further installation needed)QuPath-0.3.0-rc2.pkg
- right-click and choose Open to installQuPath-0.3.0-rc2.tar.xz
- use chmod u+x /path/to/QuPath/bin/QuPath
to make executable - and the same for QuPath.sh
if you suffer pixman problems - then launch from a command lineThis is Release Candidate 1 for QuPath v0.3.0.
That means QuPath v0.3.0 will be available within the next few weeks, and this represents the almost-final version. It's here for any enthusiastic users who want to help test the latest version before release, but it is not intended for production use.
Check out the CHANGELOG to see what's new (quite a lot, including this), and the documentation at https://qupath.readthedocs.io/en/latest/
Please report any problems at http://forum.image.sc/tag/qupath - thanks!
QuPath-0.3.0-rc1.msi
- if you want a standard Windows (local) installerQuPath-0.3.0-rc1.zip
- unzip it and double-click QuPath-0.3.0-rc1.exe (no further installation needed)QuPath-0.3.0-rc1.pkg
- right-click and choose Open to installThis is a minor release that aims to be fully compatible with v0.2.0 while fixing numerous bugs.
It is recommended for all users of earlier v0.2 releases.
Please do check the changelog for more details about what bugs have been fixed and what differences to expect.
QuPath-0.2.3-Windows.msi
- if you want a standard Windows (local) installerQuPath-0.2.3-Windows.zip
- unzip it and double-click QuPath-v0.2.3.exe (no further installation needed)QuPath-0.2.3-Mac.pkg
- right-click and choose Open to installIf you have problems installing QuPath, see here for further information. Alternatively, you can build QuPath from source using Gradle.
This is a minor release that aims to be fully compatible with v0.2.0 while fixing numerous bugs.
It is recommended for all users of earlier v0.2 releases.
Please do check the changelog for more details about what bugs have been fixed and what differences to expect.
QuPath-0.2.2-Windows.msi
- if you want a standard Windows (local) installerQuPath-0.2.2-Windows.zip
- unzip it and double-click QuPath-v0.2.2.exe (no further installation needed)QuPath-0.2.2-Mac.pkg
- right-click and choose Open to installIf you have problems installing QuPath, see here for further information. Alternatively, you can build QuPath from source using Gradle.
This is a minor release that aims to be fully compatible with v0.2.0 while fixing numerous bugs.
Please do check the changelog for more details about what differences to expect.
QuPath-0.2.1-Windows.msi
- if you want a standard Windows (local) installerQuPath-0.2.1-Windows.zip
- unzip it and double-click QuPath-v0.2.1.exe (no further installation needed)QuPath-0.2.1-Mac.pkg
- right-click and choose Open to installIf you have problems installing QuPath, see here for further information. Alternatively, you can build QuPath from source using Gradle.
This is the first stable Edinburgh release of QuPath.
More than three years since v0.1.2 and a lot has changed. Highlights include:
You can find out more in the new documentation at https://qupath.readthedocs.io
Important! It is not recommended to mix different version of QuPath for analysis. If you started a project in v0.1.2, it is probably best to continue with that version - or start again with v0.2.0.
QuPath-0.2.0-Windows.msi
- if you want a standard Windows (local) installerQuPath-0.2.0-Windows.zip
- unzip it and double-click QuPath-v0.2.0.exe (no further installation needed)QuPath-0.2.0-Mac.pkg
- right-click and choose Open to installIf you have problems installing QuPath, see here for further information. Alternatively, you can build QuPath from source using Gradle.
v0.2.0 is coming very soon - please test and report any bugs so they can be fixed in time! After that, v0.2.0 will be updated with only minor fixes until the next release is available.
v0.2.0-m12 includes many improvements and all features planned for v0.2.0.
Highlights since m11 are:
New documentation for thresholding & pixel classification here!.
QuPath-v0.2.0-m12-Windows.msi
- if you want a standard Windows (local) installerQuPath-v0.2.0-m12-Windows.zip
- unzip it and double-click QuPath-v0.2.0-m12.exe (no further installation needed)QuPath-v0.2.0-m12-Mac.pkg
- right-click and choose Open to installIf you have problems installing QuPath, see here for further information. Alternatively, you can build QuPath from source using Gradle.
v0.2.0 is coming soon - please test and report any bugs so they can be fixed in time! After that, v0.2.0 will be updated with only minor fixes until the next release is available.
v0.2.0-m11 includes several bug fixes and a major revision of pixel classification. Changes including:
QuPath-v0.2.0-m11-Windows.msi
- if you want a standard Windows (local) installerQuPath-v0.2.0-m11-Windows.zip
- unzip it and double-click QuPath-v0.2.0-m11.exe (no further installation needed)QuPath-v0.2.0-m11-Mac.pkg
- right-click and choose Open to installIf you have problems installing QuPath, see here for further information. Alternatively, you can build QuPath from source using Gradle.