1.4.0 (December 20, 2019)

Full changelog

• FIX: Mark strings containing regex escapes as raw (https://github.com/nipy/nipype/pull/3106)
• ENH: Pacify DeprecationWarnings caused by nibabel 3 pre-release (https://github.com/nipy/nipype/pull/3099)
• ENH: Allow Nipype configuration directory to be specified with NIPYPE_CONFIG_DIR environment variable (https://github.com/nipy/nipype/pull/3073)
• ENH: Add options and outputs to fsl.Eddy interface (https://github.com/nipy/nipype/pull/3034)
• ENH: Add skull_file output to fsl.BET interface (https://github.com/nipy/nipype/pull/3095)
• RF: Drop various remaining compatibilities for Python < 3.5 (https://github.com/nipy/nipype/pull/2831)
• DOC: Add Python 2 statement to README, reference maintenance branch in CONTRIBUTING (https://github.com/nipy/nipype/pull/3115)
• DOC: Miss underline before cmd in example code (https://github.com/nipy/nipype/pull/3107)
• STY: Black (https://github.com/nipy/nipype/pull/3096)
• MNT: Set junit_family to suppress pytest warning (https://github.com/nipy/nipype/pull/3111)
• MNT: Fix Dorota Jarecka ORCID (https://github.com/nipy/nipype/pull/3100)
• MNT: Drop Python 2 support (https://github.com/nipy/nipype/pull/2654)

1.3.1 (November 12, 2019)

• FIX: Restore checking traits or bunch (https://github.com/nipy/nipype/pull/3094)

1.3.0 (November 11, 2019)

Full changelog

• FIX: Fixed typo in QwarpInputSpec Trait description (https://github.com/nipy/nipype/pull/3079)
• FIX: Restore AFNICommand._get_fname, required by some interfaces (https://github.com/nipy/nipype/pull/3071)
• FIX: Remove asynchronous chdir callback (https://github.com/nipy/nipype/pull/3060)
• FIX: Minimize scope for directory changes while loading results file (https://github.com/nipy/nipype/pull/3061)
• ENH: Minimize the number of calls to _load_results when populating inputs (https://github.com/nipy/nipype/pull/3075)
• ENH: Refactor savepkl/loadpkl - add a window for loadpkl to wait for the file (https://github.com/nipy/nipype/pull/3089)
• ENH: Add "ExportFile" interface as simple alternative to "DataSink" (https://github.com/nipy/nipype/pull/3054)
• ENH: Allow nipype.cfg in cwd to be read even if ~/.nipype does not exist (https://github.com/nipy/nipype/pull/3072)
• ENH: Add precommit information for contributors and pre-commit style (https://github.com/nipy/nipype/pull/3063)
• ENH: Delay etelemetry for non-interactive sessions, report bad versions (https://github.com/nipy/nipype/pull/3049)
• ENH: Run memoized check_version at REPL import, Node/Workflow/Interface init (https://github.com/nipy/nipype/pull/30)
• RF: Provide functions to augment old Path.mkdir, Path.resolve methods (https://github.com/nipy/nipype/pull/3050)
• RF: Redirect nipype.workflows to niflow.nipype1.workflows (https://github.com/nipy/nipype/pull/3067)
• TST: Skip dcm2niix test if data fails to download (https://github.com/nipy/nipype/pull/3059)
• TST: dcm2niix test fix (https://github.com/nipy/nipype/pull/3058)
• MAINT: Drop Python 3.4 support (https://github.com/nipy/nipype/pull/3062)
• CI: make specs on Travis (https://github.com/nipy/nipype/pull/3066)

1.3.0-rc1 (October 8, 2019)

Release candidate for Nipype 1.3.0, released off-schedule to enable testing and allow downstream projects to move off of 1.2.3.

Final release scheduled for Monday, October 28.

Full changelog

• FIX: Restore AFNICommand._get_fname, required by some interfaces (https://github.com/nipy/nipype/pull/3071)
• FIX: Remove asynchronous chdir callback (https://github.com/nipy/nipype/pull/3060)
• FIX: Minimize scope for directory changes while loading results file (https://github.com/nipy/nipype/pull/3061)
• ENH: Add precommit information for contributors and pre-commit style (https://github.com/nipy/nipype/pull/3063)
• ENH: Delay etelemetry for non-interactive sessions, report bad versions (https://github.com/nipy/nipype/pull/3049)
• ENH: Run memoized check_version at REPL import, Node/Workflow/Interface init (https://github.com/nipy/nipype/pull/30)
• RF: Provide functions to augment old Path.mkdir, Path.resolve methods (https://github.com/nipy/nipype/pull/3050)
• RF: Redirect nipype.workflows to niflow.nipype1.workflows (https://github.com/nipy/nipype/pull/3067)
• TST: Skip dcm2niix test if data fails to download (https://github.com/nipy/nipype/pull/3059)
• TST: dcm2niix test fix (https://github.com/nipy/nipype/pull/3058)
• MAINT: Drop Python 3.4 support (https://github.com/nipy/nipype/pull/3062)
• CI: make specs on Travis (https://github.com/nipy/nipype/pull/3066)

1.2.3 (September 23, 2019)

Python 1.2.3 will be the last version to support Python 3.4.

Full changelog

• FIX: Patch Path.mkdir for Python 2 (https://github.com/nipy/nipype/pull/3037)
• FIX: Drop deprecated message argument to FileNotFoundError (https://github.com/nipy/nipype/pull/3035)
• FIX: Handle NIFTI extensions in afni.Qwarp (https://github.com/nipy/nipype/pull/3028)
• FIX: Disallow returning None in pipeline.utils.load_resultfile (https://github.com/nipy/nipype/pull/3023)
• ENH: Allow afni.CatMatvec to accept empty string opkeys (https://github.com/nipy/nipype/pull/2943)
• ENH: Add mrrtrix3.MRResize interface (https://github.com/nipy/nipype/pull/3031)
• ENH: Add version check / telemetry to Nipype (https://github.com/nipy/nipype/pull/3027)
• ENH: Update MCFLIRT outputs for FSL 6+ (https://github.com/nipy/nipype/pull/3029)
• ENH: Lightweight node cache checking (https://github.com/nipy/nipype/pull/3026)
• ENH: Avoid loading result from file when writing reports (https://github.com/nipy/nipype/pull/3024)
• ENH: replace portalocker with filelock (https://github.com/nipy/nipype/pull/3025)
• MAINT: Set minimum yapf for checkspecs to 0.27 (https://github.com/nipy/nipype/pull/3033)

1.2.2 (September 07, 2019)

Full changelog

• FIX: Ensure loadpkl returns a not None value (#3020)
• FIX: loadpkl failed when pklz file contained versioning info (#3017)
• FIX: Update mne.WatershedBEM command line (#3007)
• FIX: Specify correct stop criterion flag in PETPVC (#3010)
• ENH: Add interface for AFNI 3dTsmooth (#2948)
• ENH: Additional arguments to ANTs N4BiasFieldCorrection (#3012)
• ENH: Add --rescale-intensities and name_source to N4BiasFieldCorrection (#3011)
• ENH: Add index_mask_file input to ImageStats (#3005)
• RF: Remove versioning from loadpkl (#3019)
• MAINT: Add python_requires to package metadata (#3006)

1.2.1 (August 19, 2019)

Full changelog

• FIX: Resolve/rebase paths from/to results files (https://github.com/nipy/nipype/pull/2971)
• FIX: Use load_resultfile when loading a results pickle (https://github.com/nipy/nipype/pull/2985)
• FIX: Incorrect extension identified when checking File traits (https://github.com/nipy/nipype/pull/2987)
• FIX: Correctly pickle OuputMultiObject traits (https://github.com/nipy/nipype/pull/2983)
• FIX: Improve output handling in DWIDenoise and DWIBiasCorrect (https://github.com/nipy/nipype/pull/2978)
• FIX: Docker build (https://github.com/nipy/nipype/pull/2963)
• FIX: Remove '=' signs from EddyQuad argument specifications (https://github.com/nipy/nipype/pull/2941)
• FIX: Set input model to bedpostx for camino.TrackBedpostxProba (https://github.com/nipy/nipype/pull/2947)
• FIX: Allow max_shnot to be set (auto mode) (https://github.com/nipy/nipype/pull/2940)
• ENH: Update mrtrix reconst.py EstimateFOD max_sh to be able to accept list (https://github.com/nipy/nipype/pull/2990)
• ENH: Let indirectory handle nipype.utils.filemanip.Path (https://github.com/nipy/nipype/pull/2989)
• ENH: Add resolve/rebase BasePath traits methods & tests (https://github.com/nipy/nipype/pull/2970)
• ENH: Modify Directory and File traits to get along with pathlib (https://github.com/nipy/nipype/pull/2962)
• REF: Update nipype2boutiques script (https://github.com/nipy/nipype/pull/2894)
• TST: Parametrize JoinNode expansion tests over config needed_outputs (https://github.com/nipy/nipype/pull/2981)
• MAINT: Pin lxml<4.4.0 for Python 3.4 (https://github.com/nipy/nipype/pull/2980)
• MAINT: Refactor aggregate_outputs for readability (https://github.com/nipy/nipype/pull/2969)
• MAINT: Bump neurodocker version (https://github.com/nipy/nipype/pull/2965)
• MAINT: Various minor improvements to complement previous PR (https://github.com/nipy/nipype/pull/2964)
• MAINT: Sort dependencies alphabetically (https://github.com/nipy/nipype/pull/2961)

1.2.0 (May 09, 2019)

Full changelog

• FIX: Parsing of filename in AlignEpiAnatPy when filename does not have + (https://github.com/nipy/nipype/pull/2909)
• FIX: Import nibabel reorientation bug fix (https://github.com/nipy/nipype/pull/2912)
• FIX: Update FNIRT outputs for warped_file log_file to include cwd (https://github.com/nipy/nipype/pull/2900)
• FIX: Sort conditions in bids_gen_info to ensure consistent order (https://github.com/nipy/nipype/pull/2867)
• FIX: Some traits-5.0.0 don't work with Python 2.7 (https://github.com/nipy/nipype/pull/1)
• ENH: CompCor enhancement (https://github.com/nipy/nipype/pull/2878)
• ENH: Do not override caught exceptions with FileNotFoundError from unfinished hashfile (https://github.com/nipy/nipype/pull/2919)
• ENH: More verbose description when a faulty results file is loaded (https://github.com/nipy/nipype/pull/2920)
• ENH: Add all DIPY workflows dynamically (https://github.com/nipy/nipype/pull/2905)
• ENH: Add mrdegibbs and dwibiascorrect from mrtrix3 (https://github.com/nipy/nipype/pull/2904)
• TEST: Fix CI builds (https://github.com/nipy/nipype/pull/2927)
• MAINT: Reduce deprecation warnings (https://github.com/nipy/nipype/pull/2903)

1.1.9 (February 25, 2019)

Full changelog

• FIX: Make positional arguments to LaplacianThickness require previous argument (https://github.com/nipy/nipype/pull/2848)
• FIX: Import math and csv modules for bids_gen_info (https://github.com/nipy/nipype/pull/2881)
• FIX: Ensure outputs can be listed in camino.ProcStreamlines by defining instance variable (https://github.com/nipy/nipype/pull/2739)
• ENH: Allow afni.MaskTool to take multiple input files (https://github.com/nipy/nipype/pull/2892)
• ENH: Add flags dictionary input to spm.Level1Design (https://github.com/nipy/nipype/pull/2861)
• ENH: Threshold stddev once only in TSNR (https://github.com/nipy/nipype/pull/2883)
• ENH: Add workbench.CiftiSmooth interface (https://github.com/nipy/nipype/pull/2871)
• DOC: Replace initialism typo in comment with intended phrase (https://github.com/nipy/nipype/pull/2875)
• DOC: Fix typos in ANTs Registration input documentation (https://github.com/nipy/nipype/pull/2869)

1.1.8 (January 28, 2019)

Full changelog

• FIX: ANTS LaplacianThickness cmdline opts fixed up (https://github.com/nipy/nipype/pull/2846)
• FIX: Resolve LinAlgError during SVD (https://github.com/nipy/nipype/pull/2838)
• ENH: Add interfaces wrapping DIPY worflows (https://github.com/nipy/nipype/pull/2830)
• ENH: Update BIDSDataGrabber for pybids 0.7 (https://github.com/nipy/nipype/pull/2737)
• ENH: Add FSL eddy_quad interface (https://github.com/nipy/nipype/pull/2825)
• ENH: Support tckgen -select in MRtrix3 v3+ (https://github.com/nipy/nipype/pull/2823)
• ENH: Support for BIDS event files (https://github.com/nipy/nipype/pull/2845)
• ENH: CompositeTransformUtil, new ANTs interface (https://github.com/nipy/nipype/pull/2785)
• RF: Move pytest and pytest-xdist from general requirement into tests_required (https://github.com/nipy/nipype/pull/2850)
• DOC: Add S3DataGrabber example (https://github.com/nipy/nipype/pull/2849)
• DOC: Skip conftest module in API generation (https://github.com/nipy/nipype/pull/2852)
• DOC: Hyperlink DOIs to preferred resolver (https://github.com/nipy/nipype/pull/2833)
• MAINT: Install numpy!=1.16.0 from conda in Docker (https://github.com/nipy/nipype/pull/2862)
• MAINT: Drop pytest-xdist requirement, minimum pytest version (https://github.com/nipy/nipype/pull/2856)
• MAINT: Disable numpy 1.16.0 for Py2.7 (https://github.com/nipy/nipype/pull/2855)