ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
ganon build
--report-type
s in ganon report
with support to read count re-distribution (dist
) and correction by genome size (corr
) or both (abundance
)ganon report --output-format bioboxes
--top-percentile
on ganon report
build
and build-custom
--rel-cutoff
and --rel-filter
instead)--max-error
now --abs-cutoff
--min-kmers
now --rel-cutoff
--strata-filter
now --abs-filter
--rel-filter
--max-error-unique
removedFull Changelog: https://github.com/pirovc/ganon/compare/1.0.0...1.1.0
same functionality but many changes in the code: