Dolfinx Versions Save

Next generation FEniCS problem solving environment

v0.4.1

2 years ago

What's changed

Fix partitioner test by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/2150
Add Lagrange variant demo by @mscroggs in https://github.com/FEniCS/dolfinx/pull/2140
Bump pyvista and fix dolfinx/lab by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2154
Remove some xtensor functions from pull_back_nonaffine by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2149
Update version by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/2156
Set blas directory for RedHat CI by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/2160
Remove assumption that degree == highest_degree by @mscroggs in https://github.com/FEniCS/dolfinx/pull/2159
Add HHJ element to FEM pipeline test by @jhale in https://github.com/FEniCS/dolfinx/pull/2163
Add possibility to manually trigger Docker builds e.g. on release. by @jhale in https://github.com/FEniCS/dolfinx/pull/2164
Add matplotlib to Docker environment, remove from workflows. by @jhale in https://github.com/FEniCS/dolfinx/pull/2165
Fix docker default branches and tags by @jhale in https://github.com/FEniCS/dolfinx/pull/2167
Do not modify version header file source code in-place by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2166

Full Changelog: https://github.com/FEniCS/dolfinx/compare/v0.4.0...v0.4.1

v0.4.0

2 years ago

What's Changed

Remove references to uf_geometry.h in cmakeFindUFC.cmake by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1551
Allow user to supply form constants and coefficients to assemblers by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1553
Fix geometry dimension to 3 in assembler by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1555
Store C code from FFCx JIT by @michalhabera in https://github.com/FEniCS/dolfinx/pull/1556
Update version by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1554
Gmsh bump + src install by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1559
Avoid splitting of Expression::eval functionality across two files by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1560
Template over block size for common cases for vector (RHS) assembly by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1552
Add --init to lab instruction by @jhale in https://github.com/FEniCS/dolfinx/pull/1561
More vector functionality by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1566
Allow control over mesh graph re-ordering by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1567
Support re-ordering of cells by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1571
Move DOF transformations out of kernel by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1568
Update FFCx branch for CI by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1573
Avoid creation of spans in tight loops by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1574
More reference use and performance improvements by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1575
Use fixed-with Numpy integer types by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1578
Fix for Intel classic compiler by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1579
Bump dependency versions in Dockerfile by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1576
Residual0 now initialized for residual method. by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1581
Expose dof permutation bools by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1580
Just warn about topology instead of throwing error by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1584
Update spack instructions by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1583
Simplify tabulation through dolfinx::FiniteElement by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1565
Update element interface by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1582
Performance updates for pull backs by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1588
Template la::Vector over allocator by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1587
Fix array2d for USM allocators by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1589
Revise forward and reverse scatter in IndexMap by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1594
Remove the 'symmetric' neighbourhood communicator from IndexMap by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1595
Correct indexing (fixes #1597). by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1599
Reduce number of GPS re-ordering passes for mesh cells by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1600
Cleanup helmholtz demo by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1601
Add MPI_Type_dup to copy and move by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1602
Simplification in IndexMap for scattering by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1605
Fix domain id of refined meshes by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1604
Expose set_update in newton-solver by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1606
Add test for "RTCF" elements by @jpdean in https://github.com/FEniCS/dolfinx/pull/1607
Only push real32 docs by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1608
Expose map pull_back and test it with dolfinx.Expression by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1590
Permit only required data to be passed to IndexMap scatters by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1609
Get entity closure dofs from ffc rather than recomputing by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1586
Update KaHIP version and build by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1614
Fix KaHIP test by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1615
Push docker images with tag prefix by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1611
Fix misunderstanding of MPI dist graph comm reordering by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1617
Fix Docker builds by @jhale in https://github.com/FEniCS/dolfinx/pull/1619
Jhale/fix docker end user build by @jhale in https://github.com/FEniCS/dolfinx/pull/1620
Jhale/fix docker end user build by @jhale in https://github.com/FEniCS/dolfinx/pull/1621
Jhale/fix docker end user build by @jhale in https://github.com/FEniCS/dolfinx/pull/1624
Jhale/fix docker end user build by @jhale in https://github.com/FEniCS/dolfinx/pull/1625
Jhale/fix docker end user build by @jhale in https://github.com/FEniCS/dolfinx/pull/1627
Jhale/fix docker end user build by @jhale in https://github.com/FEniCS/dolfinx/pull/1628
Modernise HDF5 detection via cmake by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1630
Add radix sort and argsort (lexicographic) by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1622
Dependency version bumps in Dockerfile by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1631
Update Dockerfile to clang-12 by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1632
Use radix sort in dofmap construction by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1633
Fix llvm version for Numba by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1634
Increase storage size of ARM Docker builder by @jhale in https://github.com/FEniCS/dolfinx/pull/1635
Change runner AMI to Ubuntu-based image by @jhale in https://github.com/FEniCS/dolfinx/pull/1636
Images now called latest-openmpi and latest-mpich by @jhale in https://github.com/FEniCS/dolfinx/pull/1637
Bump CI clang version by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1638
Add explicit :latest tag by @jhale in https://github.com/FEniCS/dolfinx/pull/1640
Add :latest tag to Dockerfile instructions by @jhale in https://github.com/FEniCS/dolfinx/pull/1643
Remove duplicated code for ParMETIS and KaHIP and general partitioning improvements by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1639
Reuse sort code in "Build dual graph" by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1642
Various MPI improvements by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1645
Fixes for the new Intel Compiler by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1646
HHJ/Regge Biharmonic Integration Tests by @jhale in https://github.com/FEniCS/dolfinx/pull/1644
Add workflow_dispatch for Spack CI by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1647
Modify Spack CI by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1650
Add missing overloaded BBox collisions method by @nate-sime in https://github.com/FEniCS/dolfinx/pull/1629
Make checkout refs explicit by @jhale in https://github.com/FEniCS/dolfinx/pull/1654
Use GitHub checkout in more places by @jhale in https://github.com/FEniCS/dolfinx/pull/1656
Update Basix interface to allow variants by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1651
Update Catch2 version by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1657
Remove references to legacy Intel compiler by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1658
Remove some legacy code for finding PETSc. by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1659
Dockerfile updates by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1660
Remove interpolation code by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1661
Update name of CMake variable in message string (HDF5) by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1663
Faster way of fetching tdim by @michalhabera in https://github.com/FEniCS/dolfinx/pull/1665
Bump Ubuntu base image to 21.04 by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1664
LLVM 12 for Ubuntu 21.04 by @jhale in https://github.com/FEniCS/dolfinx/pull/1668
Try LLVM-9 by @jhale in https://github.com/FEniCS/dolfinx/pull/1669
Bump min CMake version to 3.16. Earlier versions are not tested. by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1666
Only create entities and permutation info for facet integrals when needed by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1672
Avoid computing mesh permutations when not required by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1674
Update viz CI test by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1678
Remove topology functions that shouldn't be used by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1675
Revise HDF5 detection - use hd5-config.cmake when available by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1677
Pin numpy to numba compatible version by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1682
Update versioning by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1686
Support detection of Basix library in Python tree by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1690
CI updates for Basix build change by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1691
Spack doc update on README.md by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1679
Doc link fixes by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1692
Encapsulate petsc4py and mpi4py detection in CmakeLists.txt file by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1687
Merge Docker image build into one workflow. by @jhale in https://github.com/FEniCS/dolfinx/pull/1696
Only need one badge for Docker images. by @jhale in https://github.com/FEniCS/dolfinx/pull/1697
Discontinuous elements by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1670
Fix docker action syntax. by @jhale in https://github.com/FEniCS/dolfinx/pull/1698
Fix docker caching. by @jhale in https://github.com/FEniCS/dolfinx/pull/1699
Enable xfailed test by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1701
Use (cell, local_facet_index) pairs for exterior and interior facet integral assembly by @jpdean in https://github.com/FEniCS/dolfinx/pull/1700
Remove xtensor-linalg dependency by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1703
Add missing header by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1704
Prism cell mesh by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1707
Fix Timer documentation by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1705
Add missing set_bc call by @jhale in https://github.com/FEniCS/dolfinx/pull/1710
Refactor create topology by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1711
Correct DOF transformations for dS integrals by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1712
Add more documentation and comments to topology creation by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1714
Faster symmetry tests by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1715
Remove strings from DOLFINx <-> Basix cell type conversion by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1709
Replace lattice type with Lagrange variant by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1716
Use vector instead of set in basix API by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1718
Correct offset computation for reordering by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1717
Pyvista updates by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1719
Pyvista version bumps to match pypi by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1720
Use array/int in place of array2d for packed form coefficients by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1721
Remove array2d class by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1722
Remove left-over MPICH work-around by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1713
Simplify pybind11 vector/array wrapper by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1724
Compress index map by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1680
Remove calls to xt::broadcast in interpolation by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1727
Support passing of form coefficients to assemblers from Python by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1728
Completely remove xtensor blas by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1732
Update PETSc/SLEPc to 3.16.0 in Dockerfile by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1734
Improved form creation error checking by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1737
Remove in-place MPI calls by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1738
Fix CMake Basix detection by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1733
Tweaks for building wheels by @jhale in https://github.com/FEniCS/dolfinx/pull/1740
Interpolation between functions from different spaces by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1742
ADIOS2 support (VTX and Fides) by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1655
Return span from la::Vector by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1750
Fixing doc strings by @massimiliano-leoni in https://github.com/FEniCS/dolfinx/pull/1730
Clean up extraction of spaces and boundary conditions for blocked problems by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1754
Support multiple types in Python interface by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1749
Use element names consistently by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1758
Update for ufc interface without ufc_scalar_t by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1752
Restore CI by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1759
Add complex Jupyter Notebook specification by @jhale in https://github.com/FEniCS/dolfinx/pull/1756
Fix sparsity pattern creation in python by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1762
Reshape pack coefficients to be num_cells by cstride in python by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1763
Minor MPI improvements by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1760
Bump base and package versions in Dockerfile by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1768
Spack test fixes by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1769
Some span const improvements by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1770
Fix url of INSTALL by @tkoyama010 in https://github.com/FEniCS/dolfinx/pull/1771
Install MPI manually in Dockerfle by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1772
Avoid copies in an interface to Basix by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1774
Avoid unnecessary shared_ptr by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1777
Simplify and optimise geometry maps by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1775
Be explicit with string literals by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1778
Add test that fails if default CoordinateElement is not equispaced by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1779
Set default coordinate element type to equispaced by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1780
Update Basix quadrature interface by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1783
Add [[maybe_unused]] to variables unused in "Release" mode. by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1784
Fixes #1785 by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1787
Remove copying from recursive geometry functions by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1751
Apply iwyu suggestions by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1790
Raise exception when attempting to locate dofs geometrically in a mixed element by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1789
Bump some versions in Dockerfile by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1793
Add correct number of nodes to return type of empty boundingbox tree collision computation. by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1794
Try fixing pyvistaqt by pinning version by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1795
Avoid importing cpp in demos (almost) by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1796
Use built-in pybind11 function to get string for a cell enum by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1797
Function name improvements to reflect what some functions do by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1799
Correct order of args in pybind by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1801
Use standard terminology for pull back/push forward by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1802
Interpolation for elements with different Piola maps by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1798
Implement Gibbs-Poole-Stockmeyer graph re-ordering by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1804
Fix places where data is only used in assertions, causing -Wall -Werr -pedantic to fail in Release mode by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1807
Remove Boost graph ordering by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1808
Remove references to mailing lists on README by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1809
Use interpreter variable passed to cmake to find python modules by @renefritze in https://github.com/FEniCS/dolfinx/pull/1782
Remove cout by @jpdean in https://github.com/FEniCS/dolfinx/pull/1812
Make PT-SCOTCH an optional dependency by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1810
Remove interpolate() function from Basix by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1811
Call H5Oget_info_by_nameX directly for HDF5 by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1813
Remove stray header by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1817
Updates for Basix element maps by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1819
Turn on tests of more spaces by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1818
Simplify interpolation in FE interface by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1820
Update for Basix interface by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1821
Pack coefficients only for the active entities for each kernel by @jpdean in https://github.com/FEniCS/dolfinx/pull/1800
Get dolfinx_jit_parameters.json location from envvar by @matsievskiysv in https://github.com/FEniCS/dolfinx/pull/1822
Clean up some old code by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1824
Support ParMETIS partitioning when some ranks have no data by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1823
Remedy errant boost behaviour by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1826
Documentation text fixes by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1825
Remove avg from tests by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1827
Fix parhip build error by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1828
Simplify packing coefficients by @SarahRo in https://github.com/FEniCS/dolfinx/pull/1831
Progress towards removing import of cpp in user and test code by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1805
Add diagonal enum for RectangleMesh by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1836
Consistent method/property name for accessing the MPI communicator for an object by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1838
Use std::int8_t in place of bool for bc vectors by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1839
Fix Docker action for API update by @jhale in https://github.com/FEniCS/dolfinx/pull/1841
Don't pass permutation info into interior facet integrals by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1837
Fix Docker action by @jhale in https://github.com/FEniCS/dolfinx/pull/1842
Build Linux x86_64 binary wheels by @jhale in https://github.com/FEniCS/dolfinx/pull/1815
Optimise coefficient packing for block size = 1, 2 3. by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1843
Update refinement docs by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1835
Assert cast from specific Python int to int32 is safe by @jhale in https://github.com/FEniCS/dolfinx/pull/1840
Simplify interpolation following changes to Basix and FiniteElement interfaces by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1844
Re-enable pybind11/eigen test. by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1846
remove ufc_blocked_element by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1849
Revert some change to refine by marker by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1852
Add test of vector element by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1848
Document shapes of in/out inputs in FiniteElement by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1850
Expose some functionality from cpp layer and assembly. by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1855
Remove la::VectorSpaceBasis and isolate PETSc functions by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1856
Fix refinement and add tests for sub refinement by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1861
Add GitHub funding by @jhale in https://github.com/FEniCS/dolfinx/pull/1860
Enable setting of graph partitioner used in cell partitioning from Python by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1862
Add more control over making SCOTCH optional by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1865
Simplify MPI and petsc4py casters by @jhale in https://github.com/FEniCS/dolfinx/pull/1863
Add isort configuration and non-blocking CI step by @jhale in https://github.com/FEniCS/dolfinx/pull/1864
Import some graph functions into Python module by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1866
Add non-blocking clang-format call to CI by @jhale in https://github.com/FEniCS/dolfinx/pull/1867
Missing 3 in libeigen3-dev by @jhale in https://github.com/FEniCS/dolfinx/pull/1868
Change dead petsc link to petsc4py docs by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1871
Fix for IndexMap segmentation fault by @jpdean in https://github.com/FEniCS/dolfinx/pull/1870
Update link to C++ docs by @ageorgou in https://github.com/FEniCS/dolfinx/pull/1874
Add H(curl) curl-curl eigenvalue test by @jhale in https://github.com/FEniCS/dolfinx/pull/1649
RedHat-like test environment by @jhale in https://github.com/FEniCS/dolfinx/pull/1869
Bump PETSc, SLEPc and OpenMPI versions in Dockerfile by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1877
Remove more 'private' cpp interface from Python demos/tests by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1878
Put fem-related PETSc functions into separate namespace by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1876
Try SonarCloud (experiment) by @jhale in https://github.com/FEniCS/dolfinx/pull/1880
Fix potential out-of-bounds error, not built locally. by @jhale in https://github.com/FEniCS/dolfinx/pull/1882
Fix #1558 by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1879
Revert "Fix #1558 (#1879)" by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1886
Remove PETSc Vec from fem::Function by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1885
Rename mesh generation functions by @jhale in https://github.com/FEniCS/dolfinx/pull/1884
Fix various bugs reported by sonarcloud by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1881
Update docker basic test to make images build by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1891
Fix GJK loop access by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1892
Test new sonarcloud flags by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1893
Add simple test for vector assembly using different types (Python) by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1888
Fix pullback on manifold and add test by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1890
Change create_rectangle to take two dimensional points by @jhale in https://github.com/FEniCS/dolfinx/pull/1894
Fix ranges of function data in pyvista demo by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1897
Add interpolation callable shape checks by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1896
Issue compile time error if data type is not supported (MPI) by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1902
Implement DOF permutations for VectorElement by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1901
Flatten geometry storage by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1899
Fix #1558. by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1898
Refactor DirichletBC by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1883
Update special functions tests by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1900
Allow BCs to be set with literals and arrays by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1905
Fix return type for la::Vector::norm by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1906
Interpolation of ufl expressions by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1875
Consolidate PETSc linear algebra wrapper into single h/cpp files by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1904
README badge update by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1908
Replace confusing legacy FiniteElement::value_dimension with FiniteElement::value_shape by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1910
Convert std::vector to std::vector<int8_t> by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1911
Remove unused function arguments in bc lifting implementation by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1913
Support creation of 'sub' meshes by @jpdean in https://github.com/FEniCS/dolfinx/pull/1907
Dynamically create Form classes to inherit from appropriate typed cpp base by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1909
Sort imports by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1914
Fix function copy option by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1916
Remove unnecessay semicolons by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1919
Add demo CMakeList.txt files to repo by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1918
Fix Python wrappers when SCOTCH not installed by @jhale in https://github.com/FEniCS/dolfinx/pull/1917
Rename dirichletbc.py -> bcs.py by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1920
Fix CMake python interp name by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1921
Add ufl files as CMake targets and compile when needed by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1922
Check that the CoordinateElement is correct when creating a FunctionSpace by @mscroggs in https://github.com/FEniCS/dolfinx/pull/1923
Updates for ufc.h -> ufcx.h renaming by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1924
Simplify ufcx.h detection by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1925
Store allocator type in la::Vector by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1929
Major simplification of PETSc and SLEPc detection by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1927
Remove unused xmls by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1932
Remove unused timers by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1931
Docker dependency version bumps by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1935
Fix regression in eval by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1937
Update GitHub EC2 runner by @jhale in https://github.com/FEniCS/dolfinx/pull/1938
Bump gmsh version by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1939
Update UFL dependency check by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1940
Fix narrowing of global indices in graph builder by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1941
Add uniform weights to MPI neighbor communicator by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1944
Global range bugfix by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1945
Make timing MPI reduction easily selectable, and MPI_MAX by default by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1949
Add optional cells argument in interpolate functions by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1950
Add function to get Vector allocator by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1953
Bump NumPy and xtl in Dockerfile by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1954
Refactor Function::eval for performance by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1948
Enable CMAKE_INCLUDE_CURRENT_DIR in cpp/demos by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1952
Disable Sphinx warnings as errors. by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1957
Move data allocation out of scatter_**_begin by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1956
Remove compute point values from demos by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1955
Support creation of a FiniteElement from a Basix element and add H(curl) interpolation demo by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1889
Fix questionable std::move in mesh construction by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1961
Further memory reductions in mesh construction by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1962
Add conversions from UFL manifold cell string types by @jhale in https://github.com/FEniCS/dolfinx/pull/1963
Add native dolfinx sparse matrix by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/1930
Add matrix-free demo (C++) by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1959
Bump sonarcloud. Remove broken link in favor of github tags by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1968
Fix broken SparsityPattern Python interface by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1967
SLEPc cmake fix by @jhale in https://github.com/FEniCS/dolfinx/pull/1970
Add FiniteElement::operator== to check elements for equality by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1951
Fix eval with empty input coordinates by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1942
Simplify ADIOS2 writers by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1972
Refactor pack coefficients by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/1966
Spack CI updates by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1975
Fix bug in interpolation of sub-functions by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1977
Disable some workflows on forks by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1981
Switch boost::filesystem to std::filesystem by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1980
Fix SonarCloud for remote PRs by @jhale in https://github.com/FEniCS/dolfinx/pull/1984
Add support for pathlib by @finsberg in https://github.com/FEniCS/dolfinx/pull/1978
Use std::filesystem in pybind11 layer by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1985
Remove dolfinx_utils by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1982
Update Expression by @michalhabera in https://github.com/FEniCS/dolfinx/pull/1858
Add missing ghost update to elasticity demo by @jhale in https://github.com/FEniCS/dolfinx/pull/1987
Improve VTK output by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1990
Various clean-ups by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1994
Import second level submodules automatically by @michalhabera in https://github.com/FEniCS/dolfinx/pull/1993
Allow creation of, and operations on, a Mesh where some ranks have no cells. by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1995
Extend pyvista plotting to higher order meshes. by @jorgensd in https://github.com/FEniCS/dolfinx/pull/1996
myst as source format for demos by @jhale in https://github.com/FEniCS/dolfinx/pull/1992
Remove pylit remnants by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1998
Fix deprecation warning for python 3.10 by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2001
Standards compliant debug definition by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2000
Use installed Catch2 test library by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2002
Docker bumps by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2004
Update compiler flags for mpich 4.0 in Dockerfiles by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2006
Correct offset to avoid out-of-bounds array access by @anzil in https://github.com/FEniCS/dolfinx/pull/2007
Add Python example with MatrixCSR by @garth-wells in https://github.com/FEniCS/dolfinx/pull/1999
Support creation of Vector and MatrixCSR from Python with different scalar types by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2008
Simplify and improve Python demo docs by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2010
Remove new doc deps from CI by @jhale in https://github.com/FEniCS/dolfinx/pull/2011
Change SLEPcEigenSolver.h to slepc.h by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2013
Add DPC variants by @mscroggs in https://github.com/FEniCS/dolfinx/pull/2015
Serendipity variants by @mscroggs in https://github.com/FEniCS/dolfinx/pull/2017
Sandbox PETSc-dependent NewtonSolver class in nls::petsc namespace by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2018
Fix facet plotting by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2020
Move PETSc assembly functions into submodule by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2016
Remove Function.ufl_evaluate by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2024
Add bc handling to MatrixCSR assembly from Python by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2025
Make UFL files Python by @michalhabera in https://github.com/FEniCS/dolfinx/pull/2021
Fix wheel build syntax by @jhale in https://github.com/FEniCS/dolfinx/pull/2026
Bump UFL requirement by @jhale in https://github.com/FEniCS/dolfinx/pull/2028
Add more logging to XDMF meshtags by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/2029
Fix sub element creation of function space based on basix element by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2030
Update gitattributes by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2032
Bump MPICH and pyvista version in Dockerfile by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2034
Get SLEPc from gitlab in Dockerfile [skip ci] by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2036
Run more robust Spack CI demo test by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2037
Fix interpolation-io demo [continuous element] by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/2038
Sphinx + Breathe for C++ docs by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2035
Doc CI build path updates by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2041
Use the metaclass approach for MeshTags of different types. by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2042
Remove unused variable result by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2043
Minor documentation improvements (C++/Breathe) by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2045
Remove UniqueIdGenerator by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2044
Fix relative link in C++/Breathe docs by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2046
Reduce peak memory use when distributing data in parallel by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2047
Add scalable sparse neighbourhood discovery by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2050
Simplify MeshTag construction by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2052
Fix issue with MeshTags and ufl_id by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2053
Fix MPI 'free' bug in unittest by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2057
Fix bug in topology creation by @jpdean in https://github.com/FEniCS/dolfinx/pull/2060
Topology computation improvements, removes xtensor in topology computation by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2063
Replace discrete operator with arbitrary order operator by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2051
Remove a debug line by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2064
Fix sub component name by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2068
Add missing "else" by @mscroggs in https://github.com/FEniCS/dolfinx/pull/2079
Avoid using count/id to name fem.Functions in Python by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2073
Do not overwrite UFL id in Function by @michalhabera in https://github.com/FEniCS/dolfinx/pull/2081
Some fixes for dofmap creation on a submesh by @jpdean in https://github.com/FEniCS/dolfinx/pull/2062
Return empty permutations on ranks with no cells or facets by @jpdean in https://github.com/FEniCS/dolfinx/pull/2071
Make mesh construction scalable (and remove MPI all-to-all calls) by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2080
Add Python interface for ADIOS2-based output formats by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2056
Set PETSc options prefix for matrix and vector in fem.petsc.LinearProblem by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2077
Fix typing of assemble_vector_nest by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2082
Change empty default lists to None by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2084
Test higher-order spaces on a submesh by @jpdean in https://github.com/FEniCS/dolfinx/pull/2085
Fix for exterior facet integrals on a submesh by @jpdean in https://github.com/FEniCS/dolfinx/pull/2086
Remove tdim where it can be got from the cell by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2088
Move file __enter__/__exit__ to the Python layer by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2087
Discrete interpolation matrix by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2069
Fix interpolation into serendipity by @mscroggs in https://github.com/FEniCS/dolfinx/pull/2078
Fix return type of kahip partitioner by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/2090
Fix typo - proposed by @srosenbu by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/2092
Make mesh distribution deterministic for a given number of ranks by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2093
Improvement in mesh topology computation by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2083
Remove common::subsystem by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2094
Add MyST option to enable 'dollarmath' by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2099
Add adios2 files (.bp) and pngs to gitignore by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2100
Remove redundant directory in C++ test path by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2102
Skip gemv for identity operators in interpolation_matrix by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/2095
Add access to original cell index by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/2101
Ignore zero entries - interpolation matrix by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/2105
Fix writing HDF5 files to subdirectory and flatten Python tests by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2103
Simplify topology build by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2096
Fill output matrix with 0.0 in math::pinv by @SarahRo in https://github.com/FEniCS/dolfinx/pull/2110
Submesh entity map fix by @jpdean in https://github.com/FEniCS/dolfinx/pull/2107
Docker file version bumps by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2112
Minor improvements and removal of unused includes by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2108
Support refinement of meshes with MeshTags by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/2104
Link to MPI C libraries only via CMake by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2116
Simplify local dual graph construction by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2117
Improve ghost topology computation by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2118
Fix for submeshes with entities of codimension 1 by @jpdean in https://github.com/FEniCS/dolfinx/pull/2115
Fix Dockerfile by @tiagovla in https://github.com/FEniCS/dolfinx/pull/2122
Fix typos in geometry.h by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/2129
Fix compute_boundary_facets for GhostMode.none by @jpdean in https://github.com/FEniCS/dolfinx/pull/2124
Fix expression evaluation on subset of cells by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2135
Add support for custom Basix elements by @mscroggs in https://github.com/FEniCS/dolfinx/pull/2113
Improve determination of geometry element dimension by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2128
Better submesh assembly tests by @jpdean in https://github.com/FEniCS/dolfinx/pull/2133
Throw runtime error for blocked mixed Dirichlet BC with Constant by @jorgensd in https://github.com/FEniCS/dolfinx/pull/2130
Remove an AllGather from refinement code by @chrisrichardson in https://github.com/FEniCS/dolfinx/pull/2137
Add non-recursive collision algorithm by @IgorBaratta in https://github.com/FEniCS/dolfinx/pull/2125
Simplify Spack instructions by @garth-wells in https://github.com/FEniCS/dolfinx/pull/2146
Simplify Basix element creation by @mscroggs in https://github.com/FEniCS/dolfinx/pull/2143

New Contributors

@tkoyama010 made their first contribution in https://github.com/FEniCS/dolfinx/pull/1771
@renefritze made their first contribution in https://github.com/FEniCS/dolfinx/pull/1782
@matsievskiysv made their first contribution in https://github.com/FEniCS/dolfinx/pull/1822
@SarahRo made their first contribution in https://github.com/FEniCS/dolfinx/pull/1831
@finsberg made their first contribution in https://github.com/FEniCS/dolfinx/pull/1978
@tiagovla made their first contribution in https://github.com/FEniCS/dolfinx/pull/2122

Full Changelog: https://github.com/FEniCS/dolfinx/compare/0.1.0...v0.4.0