Auspice Versions Save

• Fixed a bug for continuous color scales where tips with values of zero wouldn't appear on legend-hover or in the frequencies panel. See PR #1643 for more.
• Fixed a bug where downloaded TSVs may have unescaped quotes which resulted in incorrect parsing. See PR #1649 for more.
• Minor documentation updates. See PR #1638 for more.

• Small improvements to Auspice documentation (#1588)

• Remove support for Node.js version 12. (#1560)
• Add support for Node.js version 18 and NPM version 9. (#1560)

• Added support for Plausible Analytics and deprecated support for Google Analytics. See the documentation on configuring analytics. (#1597)

• Improvements to the measurements panel including multiple thresholds, jitter of raw measurements within color-by groups, and a sticky x-axis. See PR 1631.

• You can now turn off tip labels by selecting "none" in the dropdown. See PR #1618
• A bug in the measurements panel was fixed where the mean/SD may disappear. See PR #1593

There have been a number of internal changes with this release, most of which should not result in any different behavior while using Auspice.

• Upgraded webpack 4 → 5. See PR #1520 for more.
• Upgraded lockfile to the npm 7/8 format. See PR #1602 for more.
• Webpack cleanups via PR #1605
• Documentation autobuilding via PR #1609
• Spelling fixes (PR #1619, PR #1620)

• A narratives debugger has been added at /edit/narratives. See PR #1590 or the new Narratives Tutorial for more details. Note: this functionality will prevent auspice from viewing a dataset JSON named edit_narratives.json.

• Fixed a bug where downloaded Newick trees may be empty - often this happens when there is no newick representation for the tree being displayed and in these cases a warning notification is shown. See PR #1591 for more.
• Fixed a bug where branch labels prevented clicking on the underlying branches. See PR #1584 for more.

• Keep the measurements panel's color-by means in a stable order while filtering. See PR #1566 for more.
• Allow setting the "show all branch labels" toggle via the URL query ?showBranchLabels=all. See PR #1575 for more.
• Fix a bug where ordinal scales wouldn't be colored correctly in the frequency pane. See Issue #843 and PR #1578 for more.
• The legend can no longer have duplicate entries (both for user provided color scales and for continuous scales), which also prevents the display bug where legend items may be overlapping when switching to a different coloring. See issues #1521 and #1547, and PR 1576.
• Re-enable temporal confidence bars for trees which include this data. See PR #1577 for more.

• A range of improvements to the measurements panel including reference sera coloring and more informative tooltips. See PR 1557 for more.
• Color-by genotype dropdown: nuc (nucleotide) is now the first item in the list. See PR 1550 for more.
• Fixed a bug where zooming out one level would instead jump multiple levels. See PR 1552 for more.
• Added a toggle to force the display of all branch labels, rather than only those meeting a certain threshold. See PR 1554 for more.
• Install documentation updated. See PR 1551 for more.