Adam Versions Save

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

adam-parent-spark2_2.11-0.30.0

4 years ago

ADAM version 0.30.0 built for Spark version 2.x and Scala version 2.11

To get started,

  1. Download your favorite pre-built Apache Spark 2.x release
  2. Extract the pre-built Apache Spark 2.x binaries to location on your computer
  3. Download a binary distribution of ADAM
  4. Extract the ADAM binary distribution to a location on your computer
  5. Update your PATH environment variable to include the bin directory of the ADAM distribution to make running adam-submit, adam-shell, etc. easy from the command-line.

Or, pip install bdgenomics.adam, which will install both the ADAM binaries and the ADAM Python library.

Additionally, the bdgenomics.adam R bindings are attached to this tag as bdgenomics.adam_0.30.0.tar.gz. We plan to release bdgenomics.adam to CRAN in a future release, and are tracking the progress of this at issue 1851.

To learn more, see the documentation or visit us at http://bdgenomics.org/.

adam-parent-spark2_2.12-0.29.0

4 years ago

ADAM version 0.29.0 built for Spark version 2.x and Scala version 2.12

To get started,

  1. Download your favorite pre-built Apache Spark 2.x release
  2. Extract the pre-built Apache Spark 2.x binaries to location on your computer
  3. Download a binary distribution of ADAM
  4. Extract the ADAM binary distribution to a location on your computer
  5. Update your PATH environment variable to include the bin directory of the ADAM distribution to make running adam-submit, adam-shell, etc. easy from the command-line.

To learn more, see the documentation or visit us at http://bdgenomics.org/.

adam-parent-spark2_2.11-0.29.0

4 years ago

ADAM version 0.29.0 built for Spark version 2.x and Scala version 2.11

To get started,

  1. Download your favorite pre-built Apache Spark 2.x release
  2. Extract the pre-built Apache Spark 2.x binaries to location on your computer
  3. Download a binary distribution of ADAM
  4. Extract the ADAM binary distribution to a location on your computer
  5. Update your PATH environment variable to include the bin directory of the ADAM distribution to make running adam-submit, adam-shell, etc. easy from the command-line.

Or, pip install bdgenomics.adam, which will install both the ADAM binaries and the ADAM Python library.

Additionally, the bdgenomics.adam R bindings are attached to this tag as bdgenomics.adam_0.29.0.tar.gz. We plan to release bdgenomics.adam to CRAN in a future release, and are tracking the progress of this at issue 1851.

To learn more, see the documentation or visit us at http://bdgenomics.org/.

adam-parent-spark2_2.11-0.28.0

4 years ago

ADAM version 0.28.0 built for Spark version 2.x and Scala version 2.11

To get started,

  1. Download your favorite pre-built Apache Spark 2.x release
  2. Extract the pre-built Apache Spark 2.x binaries to location on your computer
  3. Download a binary distribution of ADAM
  4. Extract the ADAM binary distribution to a location on your computer
  5. Update your PATH environment variable to include the bin directory of the ADAM distribution to make running adam-submit, adam-shell, etc. easy from the command-line.

Or, pip install bdgenomics.adam, which will install both the ADAM binaries and the ADAM Python library.

Additionally, the bdgenomics.adam R bindings are attached to this tag as bdgenomics.adam_0.28.0.tar.gz. We plan to release bdgenomics.adam to CRAN in a future release, and are tracking the progress of this at issue 1851.

To learn more, see the documentation or visit us at http://bdgenomics.org/.

adam-parent-spark2_2.12-0.28.0

4 years ago

ADAM version 0.28.0 built for Spark version 2.x and Scala version 2.12

To get started,

  1. Download your favorite pre-built Apache Spark 2.x release
  2. Extract the pre-built Apache Spark 2.x binaries to location on your computer
  3. Download a binary distribution of ADAM
  4. Extract the ADAM binary distribution to a location on your computer
  5. Update your PATH environment variable to include the bin directory of the ADAM distribution to make running adam-submit, adam-shell, etc. easy from the command-line.

Note: To workaround some dependency conflict issues with the Spark 2.4.3 Scala 2.12 binary distribution and Hadoop, find installation hints in our Jenkins test

https://github.com/bigdatagenomics/adam/blob/master/scripts/jenkins-test#L155

To learn more, see the documentation or visit us at http://bdgenomics.org/.

adam-parent-spark2_2.11-0.27.0

5 years ago

ADAM version 0.27.0 built for Spark version 2.x and Scala version 2.11

To get started,

  1. Download your favorite pre-built Apache Spark 2.x release
  2. Extract the pre-built Apache Spark 2.x binaries to location on your computer
  3. Download a binary distribution of ADAM
  4. Extract the ADAM binary distribution to a location on your computer
  5. Update your PATH environment variable to include the bin directory of the ADAM distribution to make running adam-submit, adam-shell, etc. easy from the command-line.

Or, pip install bdgenomics.adam, which will install both the ADAM binaries and the ADAM Python library.

Additionally, the bdgenomics.adam R bindings are attached to this tag as bdgenomics.adam_0.27.0.tar.gz. We plan to release bdgenomics.adam to CRAN in a future release, and are tracking the progress of this at issue 1851.

To learn more, see the documentation or visit us at http://bdgenomics.org/.

adam-parent-spark2_2.12-0.27.0

5 years ago

ADAM version 0.27.0 built for Spark version 2.x and Scala version 2.12

To get started,

  1. Download your favorite pre-built Apache Spark 2.x release
  2. Extract the pre-built Apache Spark 2.x binaries to location on your computer
  3. Download a binary distribution of ADAM
  4. Extract the ADAM binary distribution to a location on your computer
  5. Update your PATH environment variable to include the bin directory of the ADAM distribution to make running adam-submit, adam-shell, etc. easy from the command-line.

Note: To workaround some dependency conflict issues with the Spark 2.4.3 Scala 2.12 binary distribution and Hadoop, find installation hints in our Jenkins test

https://github.com/bigdatagenomics/adam/blob/master/scripts/jenkins-test#L155

To learn more, see the documentation or visit us at http://bdgenomics.org/.

adam-parent-spark2_2.11-0.26.0

5 years ago

ADAM version 0.26.0 built for Spark version 2.x and Scala version 2.11

To get started,

  1. Download your favorite pre-built Apache Spark 2.x release
  2. Extract the pre-built Apache Spark 2.x binaries to location on your computer
  3. Download a binary distribution of ADAM
  4. Extract the ADAM binary distribution to a location on your computer
  5. Update your PATH environment variable to include the bin directory of the ADAM distribution to make running adam-submit, adam-shell, etc. easy from the command-line.

Or, pip install bdgenomics.adam, which will install both the ADAM binaries and the ADAM Python library.

Additionally, the bdgenomics.adam R bindings are attached to this tag as bdgenomics.adam_0.26.0.tar.gz. We plan to release bdgenomics.adam to CRAN in a future release, and are tracking the progress of this at issue 1851.

To learn more, see the documentation or visit us at http://bdgenomics.org/.

adam-parent-spark2_2.11-0.25.0

5 years ago

ADAM version 0.25.0 built for Spark version 2.x and Scala version 2.11

To get started,

  1. Download your favorite pre-built Apache Spark 2.x release
  2. Extract the pre-built Apache Spark 2.x binaries to location on your computer
  3. Download a binary distribution of ADAM
  4. Extract the ADAM binary distribution to a location on your computer
  5. Update your PATH environment variable to include the bin directory of the ADAM distribution to make running adam-submit, adam-shell, etc. easy from the command-line.

Or, pip install bdgenomics.adam, which will install both the ADAM binaries and the ADAM Python library. Additionally, the bdgenomics.adam R bindings are attached to this tag as bdgenomics.adam_0.25.0.tar.gz. We plan to release bdgenomics.adam to CRAN in a future release, and are tracking the progress of this at issue 1851.

To learn more, see the documentation or visit us at http://bdgenomics.org/.

adam-parent-spark2_2.11-0.24.0

6 years ago

ADAM version 0.24.0 built for Spark version 2.x and Scala version 2.11

To get started,

  1. Download your favorite pre-built Apache Spark 2.x release
  2. Extract the pre-built Apache Spark 2.x binaries to location on your computer
  3. Download a binary distribution of ADAM
  4. Extract the ADAM binary distribution to a location on your computer
  5. Update your PATH environment variable to include the bin directory of the ADAM distribution to make running adam-submit, adam-shell, etc. easy from the command-line.

Or, pip install bdgenomics.adam, which will install both the ADAM binaries and the ADAM Python library. Additionally, the bdgenomics.adam R bindings are attached to this tag as bdgenomics.adam_0.24.0.tar.gz. We plan to release bdgenomics.adam to CRAN in a future release, and are tracking the progress of this at issue 1851.

To learn more, see the documentation or visit us at http://bdgenomics.org/.