In-memory nucleotide sequence k-mer counting, filtering, graph traversal...
Yet another k-mer analyzer
SEER, reimplemented in python 🐍🔮
A compressed, associative, exact, and weighted dictionary for k-mers.
ganon2 classifies genomic sequences against large sets of references eff...
Kmer-db is a fast and memory-efficient tool for large-scale k-mer analys...
a versatile toolkit for k-mers with taxonomic information
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
Learn interpretable computational phenotyping models from k-merized geno...
sequence element (kmer) enrichment analysis
counts k-mers, written in rust