SAVER Versions Save

Single-cell RNA-seq Gene Expression Recovery

v1.1.3

2 years ago
  • Fix error caused by R version 4.2.0.

v1.1.2

4 years ago
  • Improve finish time estimation
  • Add get.mu function to get prior means
  • Make compatible with glmnet 3.0

v1.1.0

5 years ago
  • Improve finish time estimation
  • Allow input of prior predictions
  • Can set ncores to set up parallel backend
  • Update documentation
  • Make SAVER tutorial vignette
  • Allow input of sparse matrices
  • Allow return of estimates matrix only

v1.0.0

6 years ago

New Features

  • First official release

v0.4.0

6 years ago

New Features

  • Implemented faster version of SAVER which is 20-30x faster
  • No longer necessary to specify parallel = TRUE
  • Implemented progress bar

v0.3.1

6 years ago

New Features

  • Incorporate iterators package
  • Implement mean expression cutoff for prediction matrix
  • Fix minor bugs

v0.3.0

6 years ago

New Features

  • Combine parallel output using unlist instead of Reduce.
    • Reduce is computationally intensive. Might cause issue #1.
  • Add nlambda option to saver
  • Incorporate bigmemory package
  • Export cor.cells

v0.2.2

6 years ago

New Features

  • Rewrote combine function of parallel implementation of saver
  • Add null model option to saver

v0.2.1

6 years ago

New Features

  • Rewrote parallel implementation of SAVER
  • Added verbose, pred.cells, and predict.time options to saver

v0.2.0

6 years ago

New Features

  • Addressed issue #1
  • Add option to filter genes out for prediction in saver
  • Reduced saver output
  • Created correlation adjustment functions cor.genes and cor.cells