Methylpy Versions Save

WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

1.1.6

6 years ago

Fix issue in counting unconverted and converted basecalls when indel is present

add option --add-snp-info to include two additional columns in allc files to reflect genotype information

1.1.5

6 years ago

Fix bugs when methylpy processes reads over 250bp long

1.1.4

6 years ago

Fix bugs and add code for error handling

1.1.1

6 years ago
  • Fix chr prefix issue in allc-to-bigwig
  • Change the default to False for --remove-clonal in processing pipeline
  • Change cytosine position encoding to allow the processing long reads

1.1.0

6 years ago

Allows speeding up merge-allc using multiple processors methylpy now uses multithread feature of samtools Optimized the manipulation of allc index Fixed bugs

1.0.11

6 years ago

1.0.10

6 years ago

methylpy indexes allc files for faster accessing.

merge-allc function is optimized and runs faster.