CgpBigWig Versions Save

BigWig manpulation tools using libBigWig and htslib

1.5.2

3 years ago

1.5.1

3 years ago

htslib and related tools now compiled with libdeflate for performance improvements.

No impact on result.

1.5.0

3 years ago

Updates libraries:

  • htslib to 1.11
  • libBigWig to 0.4.4

1.4.0

3 years ago

1.3.0

3 years ago

No changes to in/output:

  • Update to htslib 1.10.2
  • Update base image to Ubuntu 20.04

1.2.0

3 years ago

1.2.0

Add bam2bw -S/--scale-log10 to enable simple RPKM rescaling. Thanks to @shouldsee for these modifications.

1.1.0

4 years ago

Docker build now directly linked to code. This change is made to allow large scale real data CI testing.

dockstore-cgpbigwig will be modified to only contain CWL and will essentially just retag this image.

1.0.2

5 years ago

1.0.2

  • Correct region parsing in bam2bw to cope with GRCh38 contigs

1.0.1

5 years ago
  • Fix bam2bw. Single region string and -z caused header issues.

1.0.0

5 years ago

1.0.0

  • First full release
  • Add overlapping reads support to bam2bw, bam2bwbases and bam2bedgraph via commandline flag --overlap -a
    • If the same readname is encountered twice at a position it is considred an overlapping read pair.
    • Where the same base [ACGT] was encountered on each of the reads it will only be counted once. If a different base was encountered then the coverage count is incremented once for each base.
  • Updated License headers with new email address