Version 7.0.2 has important bugfixes to qpfstats.
old qpfstats could behave badly when some samples had very low coverage
Users of ADMIXTOOLS should know that an alternate version in R (native mode -- reimplementation)
written by Robert Maier is also available on Github.
See https://github.com/uqrmaie1/admixtools Executables run fast, and it has features not available in this C version, such as interactive exploration of graph phylogenies
Version 7.0 has numerous upgrades.
a) Two new executables --qpfstats qpfmv allow precomputation of f-statistic basis.
This can greatly reduce computation costs.
b) qpAdm, qpWave, qpGraph support qpfstats output as input.
*** This is a much improved way of running with allsnps: YES. *** c) A new experimental feature of qpGraph (halfscore: YES) allows comparison of 2 phylogenies + a (weak) goodness of fit score. Be careful if running with a large nnumber of populations and consider reducing block size say blgsize: .005
Many improvements/bugfixes since earlier release
Some minor bugfixes and an upgrade that Stephan Schiffels asked for
A new parameter "numchrom" is available for rolloff. You can set chromosome number with this parameter.
This is an example: numchrom: 28
This is the first release of the executables of AdmixTools for Linux.